Resources

Below you will find rig designs and code for your experimental needs. We will continue to update, so please check back periodically. Feel free to use and modify for non-commercial purposes (contact Michael for bug reports and suggestions).

Head Restraint Designs
Head Restraint Designs

Head Restraint Hardware Designs

Contributors: Michael Goard
Features: (1) Head plate, (2) Rig-mounted head plate holder, (3) Lightblocker for visual stimulation experiments

Autobehavior Software
Autobehavior Software

Automated Behavior Software

Contributors: Nigel Bess, Kevin Sit
Features: (1) General game engine for designing visual tasks using psychtoolbox, (2) Automated behavior software for running game engine software unsupervised on home cage training rigs

Wide Field Microscope Design
Wide Field Microscope Design

Wide Field Imaging Scope Design and Software

Contributors: Michael Goard, Kevin Sit, Raquel Abreu
Features: (1) Scope design for measuring bulk calcium signals in superficial cortex, (2) MATLAB-based software for mapping higher visual regions

2P Postprocessing
2P Postprocessing

Post Processing Pipeline for 2-photon Calcium Imaging Data

Contributors: Michael Goard, Gerald Pho, James Roney
Features: (1) Rigid/non-rigid registration, (2) Automatic and manual ROI detection GUI, (3) Adaptive neuropil subtraction